Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891629.1_cds_XP_016446471.1_41323
CDS Infomation

[gene=LOC107771579] [db_xref=GeneID:107771579] [protein=serine hydroxymethyltransferase, mitochondrial-like] [protein_id=XP_016446471.1] [location=join(19206..19304,19398..19448,19613..19699,19998..20119,20287..20363,20498..20622,20711..20803,21397..21489,21575..21772,22530..22634,22728..22793,22903..22980,23334..23445,23704..23814,23928..24076)] [gbkey=CDS]
Sequence

ATGGCAATGGCTATGGCTATGGCTCTTCGTAAACTCTCTTGTGGTTCCTCCATTAAGCTT
CCTCGTCCTTTTTCCAATGGCTCTTCCCTCTATTACATGTCGTCTCTGCCTAATCAAGCA
ATTCGTGAAAGGGAGGATCCGCGTGTTACTTGGATAAAGCAGCTGAATGCGCCACTTGAG
GATATCGATCCAGAGATCGCCGACATCATTGAGCATGAGAAAGCTAGGCAATGGAAGGGT
CTTGAGCTTATCCCTTCAGAGAATTTTACGTCATTGTCAGTGATGCAAGCAGTTGGATCA
GTAATGACCAACAAATACAGTGAAGGCTATCCTGGTGCTAGATACTATGGAGGAAATGAG
TACATTGACATGGCAGAGAGATTGTGTCAAAAACGTGCATTAGAAGTTTTTAACTTGGAT
CCCGCCAAATGGGGAGTCAACGTTCAGTCGCTGTCTGGATCCCCTTCAAACTTTCAAGTG
TACACCGCTTTATTAAAGCCTCATGAGAGAATTATGGCACTCGATCTTCCTCATGGTGGA
CATCTCTCACATGGTTATCAGACCGACACAAAGAAAATTTCTGCTGTGTCTATCTTTTTC
GAGACCATGCCATACAGATTGGATGAGAGCACAGGTTATATTGACTATGATCAGCTGGAG
AAAAGTGCAGTACTCTTTCGACCAAAGTTAATTGTTGCTGGTGCAAGTGCTTATGCTCGC
TTATATGATTATGCACGTATCCGCAAGGTATGTGACAAGCAAAAAGCTGTTCTCTTGGCG
GACATGGCACATATCAGTGGCTTGGTTGCTGCTGGAGTCATTCCTTCTCCTTTTGAGTAT
GCAGATGTTGTTACTACCACAACTCACAAGTCACTTCGTGGTCCACGTGGGGCAATGATC
TTTTTCAGAAAAGGGCTGAAGGAGATAAACAAACAAGGAAAAGAAGTGATGTATGACTAT
GAAGATAAAATCAACCAAGCTGTTTTTCCCGGACTTCAAGGGGGTCCCCATAATCACACA
ATTTCTGGCTTAGCCGTTGCTCTGAAACAAGTCATGACACCGGAATACAAGGCATACCAA
GAGCAAGTTCTTAGCAATTGCTCCAAGTTTGCTGAGAGTTTGCTGGCGAACGGATATGAT
CTTGTGTCTGGTGGAACTGAGAATCATCTGGTTTTAGTAAACTTAAGAAATAAGGGTATT
GATGGCTCTAGGGTTGAGAAGGTTTTAGAGTCTGTGCATATTGCAGCCAATAAAAACACT
GTGCCCGGTGATGTATCCGCCATGGTGCCTGGTGGCATTCGCATGGGAACCCCAGCTCTG
ACTTCTAGGGGATTTATTGAGGAGGATTTTGTGAAAGTGGCTGAATTTTTTGATGCTGCT
GTGAAGTTGGCCCTTAAGGTCAAGGCTGAGACCCAAGGAACAAAGTTGAAGGACTTTGTG
GAAACTTTGAGTTCAGACTCCAAAATTCAATCTGAGATTGCCAGGCTAAGGCAGGACGTT
GAGGACTATGCAAAACAATTTCCTACTATTGGTTTCGAGAAAGAAACAATGAAATACAAG
GATTGA

Peptide Sequence

PEP ID

XP_016446471.1
PEP Infomation

PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana tabacum]
Sequence

MAMAMAMALRKLSCGSSIKLPRPFSNGSSLYYMSSLPNQAIREREDPRVTWIKQLNAPLE
DIDPEIADIIEHEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNE
YIDMAERLCQKRALEVFNLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGG
HLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSAVLFRPKLIVAGASAYAR
LYDYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI
FFRKGLKEINKQGKEVMYDYEDKINQAVFPGLQGGPHNHTISGLAVALKQVMTPEYKAYQ
EQVLSNCSKFAESLLANGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNT
VPGDVSAMVPGGIRMGTPALTSRGFIEEDFVKVAEFFDAAVKLALKVKAETQGTKLKDFV
ETLSSDSKIQSEIARLRQDVEDYAKQFPTIGFEKETMKYKD

Transcript Sequence

Gene sequence data has not been registered.